Spacefox wasn't updated per this post of yours
You can take the 40_05 set and update it with these files:
http://www.reddit.com/r/dwarffortress/comments/2ciwhp/dwarf_fortress_04006_released/cjgchxr
Also missing population cap, the other two graphic mods ironhand and phoebus are/look updated in the current pack. Hmm, even that post doesn't mention all of the changes. Missed olm man at least, ironhand and phoebus got them anyways, and it seems it was most of the humanoid creatures that were changed to 5:10 population, since [CREATURE:WILD_BOAR_MAN] was changed in creature_temperate_new. Phoebus does have that one changed so they are probably fully up to date. The humanoid creatures were changed in quite a few of the files Phoebus seems to have got them all.
I'll update what files spacefox need updating below (in raw\objects(I already did the other stuff that I wanted to fix for myself before I noticed). =done=
Minor changed needed/ can just replace with vanilla Dwarf fortress .txts in,
body_default c_variation_default creature_birds creature_birds_new creature_bug_slug_new
creature_desert_new creature_domestic creature_large_mountain creature_large_ocean creature_large_riverlake
creature_large_temperate creature_large_tropical creature_large_tundra creature_mountain_new creature_next_underground
creature_ocean_new creature_savage_tropical creature_small_mammal_new creature_subterranean creature_tropical_new
creature_tundra_taiga_new entity_default item_ammo item_weapon
Minor changes but can't just replace: [CREATURE_TILE: differences is the reason why you can't just paste these ones.
creature_insects creature_riverlakepool_new creature_small_ocean creature_standard inorganic_stone_layer(obsidian)
language_words
(YORE (vanilla) should remain as YOR (mods) could just replace YOR after you copy) Phoebus/Ironhand has YORE and not YOR. Did they switch over to YORE? Not that it'd be a bad idea for spacefox to do so but it'd break saves..plant_crops plant_standard
I'm using winmerge to see the differences between the two files, it's free. It seems to be a windows tool, so if you use mac or linux you may need to use a different program. There should be many different kinds out there.