Too true.
A lot of times people take the anti-thesis to everything and slap that on everything else - An atheist saying that all people who believe in God to be close-minded and stupid, while people who get a little too defensive about their religion view anyone who has the slightest doubt God exists to be damned and foolish. It doesn't really work like that, and I think there are a far greater number of neutrally minded people out there than we're lead to believe by the media. It doesn't help that people swing left, right, up, down, and sideways all the time at the slightest inclination or mood.
Really, I don't see any reason that "Science", the desire to understand the universe and how it works, is opposed to "Religion", the desire to believe in something beyond what you can sense with your body. Either one can be cold and ruthless, but at the same time you can find strong emotions on both sides. Science tends to explain physical elements, while Religion tends to explain spiritual or quasi-physical elements - And they can interact seamlessly, because they need to, out of necessity. One does not dominate the other, they simply coexist, and things are the way they are.
Sure, there are certain things we can prove, but that doesn't mean that the things that haven't been proven wrong are wrong. Just because I can't prove that there's something smaller than an electron doesn't mean that there isn't.
Where the big problem comes in, I think, is when you get extremists on both sides - Die hard Bible-goers who think that anything outside of the Bible is heresy and Until-I-Die Darwinists that say that evolution is the only explanation for life. The reality is that both of their arguments are bunk, because you can't prove either one to a shadow of a doubt.
Who says that God only said what he said in the Bible? Couldn't he have said more, to more people? Couldn't there have been people who were inspired to write something good, even though they weren't prophets? Could some of those people have been non-Religious folk who unknowingly furthered God's will in some way? Can't God use the natural laws that scientists are discovering to further his goals?
And, inversely, who says that just because there are means for things to exist naturally that God didn't have a part in that? Evolution is a powerful method of saying that life exists on earth, but beyond explaining variety how can you explain creating life out of lifelessness? Scientists, for all their knowledge and tools, haven't been able to create life in any circumstance, and we suddenly need to think that the only way life could exist is purely by accident or coincidence?
If that's the case, I'd hate for us to discover life on another planet, because even Earth alone is an insurmountable amount of coincidences piled up on top of each other.
So, basically, blind adherence to a law or belief is what causes this big debates and problems. Haters gonna hate, and all that, but so long as they don't try to force their beliefs over me or insult me because of what I think or believe, I'm okay with that. From where I'm sitting, neither view debunks the other.
The only debunking going on seems to be coming from people, not ideas.