I've noticed this in the last 4-5 versions for farming myself. Some maps, my dwarves will REFUSE to plant seeds (usually gets 1 done, then stops and begins this bug). They often run to the bag, but don't take it, get a ? on them, try again, and do a little funky dance going back and forth (until they change job tasks). I've allowed/denied barrels in stockpiles, erased stockpiles, forbid/claimed the seeds, bags, etc. Nothing solved it.
They did this with Butchering (due to being historical figures, and kept trying to butcher them non-stop).
And it occurs often with Hive keeping and trying to grab a wild colony, I'd have every hivekeeper in the fort stand on a hive till they almost die of hunger or similar, run off, come back, and stand on it with the same red ? animation, then immediately retrying.
As for the causes of all this, I'm not sure myself. The 'not showing up on farm list' isn't an issue for me. The bug seems to be biome based (I can embark twice in the same biome, and encounter it in both forts - yet a new biome I have no issue, even with the same plants).
I don't use burrows at all (bar a small emergency 'get these idiot urists inside and not picking flowers in the field when a red dragon comes to visit), so it's not burrows either...
If i get the bug, I'll work on finding the cause/fix to it (assuming there is some trick in game to fix it until Meph figures the issue out).