@Paris
Umm, what? I think you're very correct- I never even considered having the ship going down to a planet, or even transporting teams of black ops or whatever. I thought you meant something like being in orbit with a good camera, for spying, or possibly using the amp to MC someone, if the Avatar is that good. If it would have any role in transporting, it would be something like flying the troops from a carrier near the JP, and dropping them off with MK.IIIs. And they'd probably need to be robots or something, because I doubt stasis tanks are small. Yes, for troop transport, a more traditional ship is way better, because you shouldn't even need flexible space magic on that.
As to your autopilot statement... It's an avatar. Pilot should not be leaving. Especially not while in orbit.
As far as the microwave manips... they don't have to be strong at all. They just need to counter any heat buildup that the avatar produces, and maybe any absorbed radiation from stars; The pilot can remove any initial excess, and any weird surges. They're probably not of an entirely negligible size, but I highly doubt they're anywhere near as large as automanips capable of making the thing reach escape velocity.
And yes, a ghostship would probably be superior to either option. It's just even harder to get volunteers for, considering the fact that it's effectively death from an individual's perspective. At least with the drones, you can be removed and put in a normal robobody.
@Serious
Saint hasn't killed anyone in-game, other than one sod last turn, and sods aren't really people. Plus, that sod is getting cloned thirty times a day now, so it's almost like negative kills.